Unidade de Genômica Computacional Darcy Fontoura de Almeida (UGCDFA)


Artigos publicados a partir de dados gerados na Unidade de Genômica Computacional Darcy Fontoura de Almeida


  1. Metagenomic analysis reveals microbial functional redundancies and specificities in a soil under different tillage and crop-management regimes. Applied Soil Ecology, 2015.
  2. Peroxide sensing and signaling in the Sporothrix schenckii complex: an in silico analysis to uncover putative mechanisms regulating the Hog1 and AP-1 like signaling pathways. Medical Mycology, 2015.
  3. Draft Genome Sequences of Six Actinobacillus pleuropneumoniae Serotype 8 Brazilian Clinical Isolates: Insight into New Applications. Genome Announcements, 2015.
  4. Biochemical and phylogenetic analyses of phosphatidylinositol production in Angomonas deanei, an endosymbiont-harboring trypanosomatid. Parasites & Vectors, 2015.
  5. Characterization of BKC-1 class A carbapenemase from Klebsiella pneumoniae clinical isolates in Brazil. Antimicrobial Agents and Chemotherapy, 2015.
  6. Chromosomal copy number variation reveals differential levels of genomic plasticity in distinct Trypanosoma cruzi strains. BMC Genomics, 2015.
  7. Genome Sequence of Bradyrhizobium tropiciagri Strain CNPSo 1112 , Isolated from a Root Nodule of Neotonia wightii. Genome Announcements, 2015.
  8. Genome Sequence of Bradyrhizobium viridifuturi Strain SEMIA 690 , a Nitrogen-Fixing Symbiont of Centrosema pubescens. Genome Announcements, 2015.
  9. Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae:Laeliinae), a neotropical repiculous species. Mitochondrial DNA, 2015.
  10. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. BMC Genomics, 2014.
  11. Unravelling the Transcriptome Profile of the Swine Respiratory Tract Mycoplasmas. Plos One, 2014.
  12. Genomic Analyses and Transcriptional Profiles of the Glycoside Hydrolase Family 18 Genes of the Entomopathogenic Fungus Metarhizium anisopliae. Plos One, 2014.
  13. Comparative genome analysis of entomopathogenic fungi reveals a complex set of secreted proteins. BMC Genomic, 2014.
  14. Genome of the Avirulent Human-Infective Trypanosome-Trypanosoma rangeli. PLoS Neglected. Tropical Disease, 2014.
  15. Mitochondrial respiration and genomic analysis provide insight into the influence of the symbiotic bacterium on host trypanosomatid oxygen consumption. Parasitology, 2014.
  16. The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes. BMC Genomics, 2014.
  17. Draft Genome Sequence of the D-Xylose-Fermenting Yeast Spathaspora arborariae UFMG-HM19.1AT. Genome Announcements, 2014.
  18. Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms. BMC Genomics, 2014.
  19. Trypanosoma cruzi Clone Dm28c Draft Genome Sequence. Genome Announcement, 2014.
  20. Isolation, cultivation and genomic analysis of magnetosome biomineralization genes of a new genus of South-seeking magnetotactic cocci within the Alphaproteobacteria. Frontiers in Microbiology, 2014.
  21. De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers. BMC Genomics, 2014.
  22. Taxonomic and functional profiles of soil samples from Atlantic forest and Caatinga biomes in northeastern Brazil. MicrobiologyOpen, 2014.
  23. Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean. BMC Genomics, 2014.
  24. Empirical assessment of sequencing errors for high throughput pyrosequencing data. BMC Research Notes, 2013.
  25. Monophyletic Origin of Magnetotaxis and the First Magnetosomes. Environmental Microbiolog, 2013.
  26. Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family. Plos One, 2013.
  27. New insights on the biology of swine respiratory tract mycoplasmas from a comparative genome analysis. BMC Genomics, 2013
  28. The Genome of Anopheles darlingi, the main neotropical malaria vector. Nucleic Acids Research, 2013.
  29. A potential source for cellulolytic enzyme discovery and environmental aspects revealed through metagenomincs of Brazilian mangroves. AMB Express, 2013.
  30. New insights on the Golgi complex of Tritrichomonas foetus. Parasitology, 2013.
  31. Biosynthesis of Vitamins and Cofactors in Bacterium-Harbouring Trypanosomatids Depends on the Symbiotic Association as Revealed by Genomic Analyses. Plos One, 2013.
  32. Deciphering unusual uncultured magnetotactic multicellular prokaryotes through genomics. The ISME Journal, 2013.
  33. Soil metagenomics reveals differences under conventional and no-tillage with crop rotation or succession. Applied Soil Ecology, 2013.
  34. Complete Genome Sequence of a Variant of the Methicillin-Resistant Staphylococcus aureus ST239 Lineage, Strain BMB9393, Displaying Superior Ability To Accumulate ica-Independent Biofilm. Genome Announcements, 2013.
  35. Comparative Genomic Analysis of Magnetotactic Bacteria from the Deltaproteobacteria Provides New Insights into Magnetite and Greigite Magnetosome Genes Required for Magnetotaxis. Environmental Microbiology (Print), 2013
  36. Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers. BMC Evolutionary Biology (Online), 2013.
  37. Abrolhos Bank Reef Health Evaluated by Means of Water Quality, Microbial Diversity, Benthic Cover, and Fish Biomass Data. Plos One, 2012.
  38. Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains. Genetics and Molecular Biology (Print), 2012.
  39. Gut Bacterial Communities in the Giant Land Snail Achatina fulica and Their Modification by Sugarcane-Based Diet. Plos One, 2012.
  40. Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera brasiliensis. Plos One, 2012.
  41. Soil bacterial community abundance and diversity in ice-free areas of Keller Peninsula, Antarctica. Applied Soil Ecology (Print), 2012.
  42. Analysis of Composition-Based Metagenomic Classification. BMC Genomics, 2012.
  43. Pyrosequencing-based analysis reveals a novel capsular gene cluster in a KPC-producing Klebsiella pneumoniae clinical isolate identified in Brazil. BMC Microbiology (Online), 2012.
  44. Complete genome sequence of Burkholderia phenoliruptrix BR3459a (= CLA1), a heat-tolerant nitrogen-fixing symbiont of Mimosa flocculosa. Journal of Bacteriology (Print), 2012.
  45. Metagenomic Analysis of the Microbiota from the Crop of an Invasive Snail Reveals a Rich Reservoir of Novel Genes. Plos One, 2012.
  46. Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.). BMC Genomics, 2012.
  47. Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River. Plos One, 2011.
  48. Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual. Nucleic Acids Research, 2011.
  49. Common ancestry of iron oxide- and iron-sulfidebased biomineralization in magnetotactic bacteria. The ISME Journal, 2011.
  50. Genomic insights into the versatility of the plant growth-promoting bacterium Azospirillum amazonense. BMC Genomics, 2011.
  51. Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing. Genome Biology (Print), 2010.